Chemical elements in sediments and in bivalve mollusks from estuarine regions in the south of Bahia State, northeast Brazil / Elementos químicos em sedimentos e em moluscos bivalves de regiões estuarinas do sul do Estado da Bahia, Nordeste do Brasil

Abstract Estuaries receive daily inputs of chemical elements which can impact the quality of water and sediment, as well as the health of biota. In addition to the sediment, bivalve mollusks have been used in the chemical monitoring of these systems. This study investigated the presence and contents of As, Ba, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn in superficial sediment and in bivalves (Crassostrea gasar, C. rhizophorae and Mytella guyanensis) from estuaries in the south / extreme south of Bahia State, northeast Brazil. The samples were evaluated with inductively coupled plasma optical emission spectrometry (ICP-OES, Varian 710). Except for Cd, all other elements were found in the samples, being that Co was exclusive in the sediment. The estuaries equivalent to sampling stations #1 - Valença, #2 - Taperoá, #3 - Ilhéus and #4 - Belmonte showed levels of metals compatibles with those established by the Brazilian legislation, however, the #5 - Santa Cruz Cabrália, in addition to the presence of As, presented a high level of Pb and Cu in C. gasar, which was attributed to the impacts of nautical activities in that locality.

Resumo Estuários recebem entradas diárias de elementos químicos, que podem impactar a qualidade de água e do sedimento, assim como a saúde da biota. Além do sedimento, moluscos bivalves têm sido utilizados no monitoramento químico desses sistemas. Neste estudo investigou-se a presença e os teores de As, Ba, Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb e Zn no sedimento superficial e em bivalves (Crassostrea gasar, C. rhizophorae e Mytella guyanensis) de estuários do sul / extremo sul do estado da Bahia, Nordeste do Brasil. As amostras foram avaliadas por espectrometria de emissão óptica de plasma indutivamente acoplado (ICP-OES, Varian 710). Exceto Cd, todos os demais elementos foram encontrados nas amostras, sendo que Co foi exclusivo no sedimento. Os estuários equivalentes às estações amostrais #1 - Valença, #2 - Taperoá, #3 - Ilhéus e #4 - Belmonte mostraram níveis de metais compatíveis com os estabelecidos pela legislação brasileira, porém, a #5 - Santa Cruz Cabrália, além da presença de As, apresentou alto nível de Pb e de Cu em C. gasar, o que foi atribuído aos impactos por atividades náuticas nesse local.

Impact of treated sewage on meiobenthic nematodes: a case study from the Tunisian Refining Industries Company / Impacto de esgoto tratado em nematoides meiobentônicos: um estudo de caso da Tunisian Refining Industries Company

The organization of the roots, ganglia and the peripheral distribution of the cranial nerves of the fully formed embryos of Oreochromis niloticus are examined in the transverse serial sections. These nerves carry fibers, which were also analyzed. The results of this study demonstrated that the glossopharyngeal nerve originates by means of only one root, which leaves the cranium through the glossopharyngeal foramen. This nerve gives fibers (visceromotor) to the first internal and external levator arcus branchialis muscles. There is a single epibranchial (petrosal) ganglion located extracranially. Nervus glossopharyngeus has three rami; pharyngeus, pretramticus and posttrematicus. The ramus pharyngeus carries only viscerosensory fibers; general for the pharyngeal epithelium and special ones for the pseudobranch. General viscerosensory fibers are also carried by rami pretrematicus and posttrematicus for the pharyngeal epithelial lining. The special sensory fibers are carried by the ramus pretrematicus for the taste buds and by ramus posttrematicus for the gill filaments. The ramus pretrematicus also carries visceromotor fibers for the first adductor arcus branchialis and to the first obliquus ventralis muscles.

A organização das raízes, gânglios e a distribuição periférica dos nervos cranianos dos embriões totalmente formados de Oreochromis niloticus são examinados nas seções transversais seriais. Esses nervos carregam fibras, que também foram analisadas. Os resultados deste estudo demonstraram que o nervo glossofaríngeo se origina por meio de apenas uma raiz, que sai do crânio pelo forame glossofaríngeo. Este nervo fornece fibras (visceromotoras) para os primeiros músculos levantadores do arco branquial interno e externo. Existe um único gânglio epibranquial (petroso) localizado extracranialmente. Nervus glossopharyngeus tem três ramos; faríngeo, pretramticus e póstrematicus. O ramo faríngeo contém apenas fibras viscerossensoriais ­ gerais para o epitélio faríngeo e especiais para o pseudobrânquio. Fibras viscerossensoriais gerais também são transportadas por ramos pretrematicus e posttrematicus para o revestimento epitelial da faringe. As fibras sensoriais especiais são transportadas pelo ramus pretrematicus para as papilas gustativas e pelo ramus posttrematicus para os filamentos branquiais. O ramo pretrematicus também carrega fibras visceromotoras para o primeiro adutor arcus branchialis e para o primeiro músculo oblíquo ventral.

Biological control of incrusting organisms and sediments in Chilean oyster cultures / Controle biológico dos organismos incrustáveis e sedimentos em culturas de ostras Chilenas

The oyster culture has the incrusting organism as problem for production, in this context, it evaluated as biological control against incrusting organism and sediments the introduction of gastropod Tegula atra (Lesson, 1830) in Chilean oysters (Triostrea chilensis Phillippi, 1844) cultures in conditions of starvation presence and absence located in floating cages and bottom cultures. The predation and mechanic effect on T. atra grazing generated a decreasing in seven days of 19.8% and 13.7% of incrusting organisms in cage culture and bottom sediments by effects of gastropods without starvation respectively. Whereas it had a decrease of 12.6% and 11.4% of incrusting organisms in cage culture and bottom sediments by effects of gastropods with starvation respectively. The incrusting organism removed were mainly algae, colonial ascidia, polychaeta, bryozoan and small crustaceans.

A cultura da ostra tem como problema de produção o organismo incrustante, neste contexto, avaliou como controle biológico contra organismos incrustantes e sedimentos a introdução do gastrópode Tegula atra (Lesson, 1830) em culturas de ostras chilenas (Triostrea chilensis Phillippi, 1844) em condições de presença e ausência de fome, localizadas em gaiolas flutuantes e culturas de fundo. A predação e o efeito mecânico no pastejo de T. atra geraram uma diminuição em sete dias de 19,8% e 13,7% dos organismos incrustantes na cultura em gaiola e nos sedimentos de fundo, por efeito de gastrópodes sem fome, respectivamente. Considerando que houve decréscimo de 12,6% e 11,4% dos organismos incrustantes na cultura em gaiola e nos sedimentos de fundo pelos efeitos dos gastrópodes com fome respectivamente. Os organismos incrustantes removidos eram principalmente algas, ascídias coloniais, poliquetas, briozoários e pequenos crustáceos.

Spatio-temporal sublittoral macrobenthic distribution and dominant species in Guanabara Bay, Rio de Janeiro, Brazil / Distribuição espaço-temporal do macrobentos de infralitoral e espécies dominantes na Baía de Guanabara, Rio de Janeiro, Brasil

Abstract Soft-bottom macrobenthic invertebrates are sensitive to natural or anthropogenic changes in aquatic ecosystems. The distribution patterns of sublittoral macrobenthic species in Guanabara Bay were studied from 2005 to 2007. Samples were collected at ten stations during six surveys throughout the rainfall regime (dry, early and late rainy). Ten replicates were collected at each station by Gravity corer or skin diving. Van Dorn bottles (bottom water) and by Ekman sediment sampler (granulometry) provided material for abiotic data. Stations were grouped into sectors (Entrance, Intermediary and Inner) based on abiotic data and location. The Redundancy Analysis (RDA) and Parsimonious RDA for all years and each annual cycle showed indicator taxa with high dominance in each sector. PERMANOVA indicated a regular seasonality between the surveys for the first annual cycle (p <0.05), and an atypical pattern for the second (p> 0.05), possibly due the low rainfall observed during this period. The mosaic of soft-bottom substrates infers structural variables, and patterns of temporal distribution were basically influenced by parameters those indicating pollution and the SACW (South Atlantic Central Water) intrusion, as well as ecological attributes among species, such as: predation, competition. The Ervilia concentrica and Cypridinidae could be used as indicators for anthropic and natural impacts in the Guanabara Bay for the Entrance sector, while Cyprideis salebrosa and Cyprideis sp. for the Intermediary sector and Heleobia australis for the Inner sector.

Resumo Os invertebrados macrobentônicos são sensíveis as alterações naturais e antrópicas nos ecossistemas aquáticos. O padrão de distribuição das espécies macrobentônicas do infralitoral da Baía de Guanabara foram estudados de 2005 até 2007. Amostras foram coletadas em dez estações durante seis campanhas em todo o regime pluviométrico (seco, pré e pós chuvoso). Dez réplicas foram coletadas em cada estação por meio do amostrador Gravity corer ou por mergulho livre. Os dados abióticos foram coletados por meio de garrafa oceanográfica do tipo van Dorn (água de fundo) e por busca fundo do tipo Ekman (granulometria). As estações foram agrupadas em setores (Entrada, Intermediária e Interna) baseada nos dados abióticos e localização. A Análise de Redundância (RDA) e RDA Parcimoniosa para todos os anos e em cada ano evidenciou taxa indicadores como elevada dominância em cada setor. A PERMANOVA indicou sazonalidade regular entre as campanhas para o primeiro ciclo anual (p<0.05), padrão atípico para o segundo ano (p> 0.05), possivelmente por causa da baixa pluviosidade observada durante esse período. O mosaico do substrato não consolidado infere que as variáveis estruturais, e os padrões de distribuição temporal foram basicamente influenciadas por parâmetros que indicam poluição e intrusão de ACAS (Água Central do Atlântico Sul), bem como atributos ecológicos entre espécies, tais como: predação, competição, entre outros. Ervilia concentrica e Cypridinidae podem ser utilizados como indicadores de alterações naturais e antrópicos no setor da Entrada da Baía de Guanabara, enquanto Cyprideis salebrosa e Cyprideis sp. para o setor Intermediário e Heleobia australis para o setor Interno.

Changes in freshwater sediment microbial populations during fermentation of crude glycerol

BACKGROUND: This work studied how the exposure to an unusual substrate forced a change in microbial populations during anaerobic fermentation of crude glycerol, a by-product of biodiesel production, with freshwater sediment used as an inoculum. RESULTS: The microbial associations almost completely (99.9%) utilized the glycerol contained in crude glycerol 6 g L 1 within four days, releasing gases, organic acids (acetic, butyric) and alcohols (ethanol, n-butanol) under anaerobic conditions. In comparison with control medium without glycerol, adding crude glycerol to the medium increased the amount of ethanol and n-butanol production and it was not significantly affected by incubation temperature (28 C or 37 C), nor incubation time (4 or 8 d), but it resulted in reduced amount of butyric acid. Higher volume of gas was produced at 37 C despite the fact that the overall bacterial count was smaller than the one measured at 20 C. Main microbial phyla of the inoculum were Actinobacteria, Proteobacteria and Firmicutes. During fermentation, significant changes were observed and Firmicutes, especially Clostridium spp., began to dominate, and the number of Actinobacteria and Gammaproteobacteria decreased accordingly. Concentration of Archaea decreased, especially in medium with crude glycerol. These changes were confirmed both by culturing and culture-independent (concentration of 16S rDNA) methods. CONCLUSIONS: Crude glycerol led to the adaptation of freshwater sediment microbial populations to this substrate. Changes of microbial community were a result of a community adaptation to a new source of carbon.

A methodological proposal for the analysis of Cladocera (Crustacea, Branchiopoda) subfossils from sediments of temporary aquatic ecosystems / Uma proposta metodológica para a análise de subfósseis de Cladocera (Crustacea, Branchiopoda) de sedimentos de ecossistemas aquáticos temporários

Abstract The main objective of the present study was to promote some adaptations to the standard methodology used in the analysis of Cladocera subfossils. The samples used in this study were collected at Lagoa dos Coutos, a temporary lake located on an outcrop with iron-rich duricrust in the Serra do Gandarela (Minas Gerais, Brazil). The sediment from this pond, typical of temporary ecosystems in the region, is characterized by rigid concretions that are difficult to dissolve in aqueous media, making it difficult to visualize and analyze subfossils taxa. Sediment samples were prepared according to the standard methodology used in paleolimological studies and the methodological adaptations proposed in the present study, which included the addition of 1 mg of Kochia scoparia, a palynological marker used to estimate subfossil density, as well as the addition of hydrofluoric acid (HF) to oxidize silicate materials. The samples prepared according to the new methodological procedure improved Cladocera subfossil visualization, facilitating the taxonomic analysis of the species. The samples submitted to the standard methodological procedure had a significantly higher mean of sediment particles (mean of 84.2 sediment particles) and 70% more residues compared to the samples prepared with the newly proposed methodology (mean of 22.1 sediment particles). Absolute data on the temporal variation of the density of Cladocera subfossils was obtained by using the palinological marker K. scoparia, which showed higher densities of subfossils in more recent, humid periods (112,000 subfossils/cm3 at 5 cm, equivalent to 3,500 years BP). The results indicate that the new methodology can contribute to advances in paleolimnological studies of temporary aquatic ecosystems, whose lake histories are rarely investigated, despite their ecological relevance as ecosystems that indicate environmental and climatic changes.

Resumo O principal objetivo do presente estudo foi promover algumas adaptações na metodologia padrão utilizadas para a análise de subfósseis de Cladocera. As amostras utilizadas nessa pesquisa foram coletadas na Lagoa dos Coutos, uma lagoa temporária encontrada em solo de afloramento ferruginoso na Serra do Gandarela (Minas Gerais, Brasil). O sedimento desta lagoa, típico de ecossistemas temporários da região, caracteriza-se por apresentar concreções rígidas de difícil dissolução em meio aquoso, que dificultam a visualização e análise taxonômica dos subfósseis. Amostras de sedimento foram preparadas de acordo com a metodologia padrão utilizada em estudos paleolimnológicos e as adaptações metodológicas propostas no presente estudo, que incluíram a adição de 1 mg de Kochia scoparia, um marcador palinológico utilizado para estimar a densidade de subfósseis, além da adição de ácido fluorídrico (HF) para oxidação de materiais silicáticos. As amostras preparadas de acordo com o novo procedimento metodológico apresentaram melhor visualização dos subfósseis de Cladocera, facilitando a análise taxonômica das espécies. As amostras submetidas ao procedimento metodológico padrão apresentaram uma média significativamente maior de partículas de sedimentos (média de 84,2 partículas de sedimento) e 70% mais resíduos em comparação com as amostras preparadas com a nova metodologia proposta (média de 22,1 partículas de sedimento). Dados absolutos sobre a variação temporal da densidade dos subfósseis de Cladocera foram obtidos a partir do uso do marcador palinológico K. scoparia, revelando densidades mais elevadas de subfósseis nos períodos recentes (112.000 subfósseis/cm3 nos 5 cm iniciais, equivalentes a 3.500 anos BP). Os resultados obtidos indicam que a nova metodologia pode contribuir para avanços em estudos paleolimnológicos de ecossistemas aquáticos temporários, raramente contemplados na reconstrução da história de lagos, apesar de sua relevância ecológica como ecossistemas sinalizadores de mudanças ambientais e climáticas.

Produção de L-asparaginase pela levedura Leucosporidium muscorum CRM 1648 isolada de sedimento marinho coletado na Península Antártica / L-asparaginase production by the yeast Leucosporidium muscorum CRM 1648 isolated from marine sediments collected in Antarctic Peninsula

L-asparaginase (L-ASNase) é uma enzima com propriedades interessantes para a indústria médica, farmacêutica e de alimentos, que tem recebido atenção especial, inclusive no Brasil, por fazer parte do protocolo de tratamento de distúrbios linfoproliferativos, como a leucemia linfoblástica aguda (LLA). No mercado desde a década de 1970, as enzimas de origem bacteriana enfrentam algumas limitações por provocarem reações adversas graves em quase 80% dos pacientes em tratamento. Nesse contexto, L-ASNases provenientes de leveduras se destacam como alternativa, por serem mais próximas às congêneres humanas. A Antártica ainda é um ambiente pouco explorado, com grande diversidade de microrganismos com potencial para a produção de moléculas biológicas de interesse industrial. Nesse contexto, 150 leveduras isoladas de amostras de sedimento marinho coletadas na Península Antártica como parte do projeto MICROSFERA (PROANTAR/CNPq) foram avaliadas para a produção de L-ASNase. A triagem resultou em 9 isolados produtores, dos quais 7 pertencem ao gênero Leucosporidium. A linhagem L. muscorum CRM 1648 foi a que produziu mais enzima (540 U.L-1), com maior produtividade (5,6 U.L-1.h-1) e, por isso, foi alvo deste estudo. A análise univariada de fontes de carbono e nitrogênio indicou maior crescimento desse microrganismo e produção de L-ASNase em meio CD com extrato de levedura, prolina e sacarose. Ureia, cloreto de amônio e sulfato de amônio resultaram em baixa ou nenhuma produção da enzima, sugerindo que a metabolização de fontes de nitrogênio por essa linhagem está sob a influência do fenômeno de repressão catabólica pelo nitrogênio (RCN). Dois delineamentos experimentais do tipo fatorial completo resultaram em um aumento de 10 vezes na produção e produtividade da enzima (4582,5 U.L-1 e 63,6 U.L-1.h-1, respectivamente). A análise univariada da concentração inicial de inóculo (X0), pH inicial do meio, temperatura e adição de água do mar mostrou que a melhor condição para a produção foi: pH = 5,5 ou 6,5, cultivo a 15°C com adição de água do mar (25-50% m/v). A variável X0 não foi significativa nas concentrações avaliadas. Cultivos em biorreator (batelada) foram conduzidos em quatro diferentes níveis de oxigênio dissolvido (OD): (1) OD não controlado e abaixo de 20%, (2) OD não controlado e acima de 20%, (3) OD controlado em 80% e (4) OD controlado em 20%. Os resultados mostraram que OD é fator limitante para o crescimento de L. muscorum CRM 1648 e produção de L-ASNase por essa levedura e deve ser mantido acima de 35% para maior produção da enzima.Neste trabalho, a composição do meio e condições de cultivo foram estabelecidas para favorecer a produção de uma nova L-ASNase livre de atividade glutaminásica por levedura adaptada ao frio, abrindo espaço para novos estudos acerca de seu potencial antileucêmico e possível uso como alternativa às enzimas já existentes no mercado no tratamento de LLA

L-asparaginase (L-ASNase) is an enzyme with interesting properties for medical, pharmaceutical and food industry, which has received special consideration, especially in Brazil, for being part of lymphoproliferative disorders treatment, such as acute lymphoblastic leukemia (ALL). Bacterial enzymes are on the market since the 1970s and face some limitations related to theirserious adverse reactions that reach almost 80% of all patients in treatment. In this context, L-ASNases from yeasts are highlighted as important alternative to bacterial enzymes, due to the closerphylogeny to human congeners. Antarctic environment has much to be explored, with a vast diversity of microorganisms with potential to produce biomolecules with industrial interest. A total of 150 yeasts isolated from Antarctic marine sediments as part of MICROSFERA project (PROANTAR/CNPq) were evaluated for L-ASNase production. The screening resulted in 9 producers, 7 species from the genus Leucosporidium. L. muscorum CRM 1648 was the strain that yielded the highest L-ASNase activity (540 U.L-1) and volumetric productivity (5.6 U.L-1.h-1). Carbon and Nitrogen sources were evaluated by a method of one-factor at a time (OFAT). From the gather results, sucrose, yeast extract and proline resulted in a maximal growth and highest enzyme production.The absence or low production of L-ASNase in medium with urea, ammonium chloride and ammonium sulfate suggests the presence of nitrogen catabolic repression (NCR). Carbon and nitrogen concentration were evaluated by full factorial design and yielded about ten times higher enzyme and volumetric productivity (4582.5 U.L-1 and 63.6 U.L-1.h-1, respectively). Initial inoculum concentration (X0), initial pH, temperature and concentration of seawater in the culture were evaluated by OFAT analysis and the best condition for L-ASNase production was: pH = 5.5 or 6.5, at 15 °C with addition of seawater (25-50 wt%). X0 was not considered a significant variable. Bioreactor assays (in batch regime) were performed in four different dissolved oxygen (DO) levels: (1) without DO control (DO remained under 20%), (2) without DO control (DO remained above 20%), (3) DO controlled at 80%, and (4) DO controlled at 20%.The results showed that DO is a key factor for growth of L. muscorum CRM 1648 and production of L-ASNase by this yeast and should be maintained above 35% for higher production of this enzyme.At this work, the medium and culture conditions were established to support the production of a novel glutaminase-free L-ASNase by a cold adapted yeast, opening a new path for further studies regarding its antileukemic potential and possible use as an alternative for ALL treatment

Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake / 基因组蛋白质组与生物信息学报·英文版

Agricultural activities, including stock-farming, planting industry, and fish aquaculture, can affect the physicochemical and biological characters of freshwater lakes. However, the effects of pollution producing by agricultural activities on microbial ecosystem of lakes remain unclear. Hence, in this work, we selected Honghu Lake as a typical lake that is influenced by agriculture activities. We collected water and sediment samples from 18 sites, which span a wide range of areas from impacted and less-impacted areas. We performed a geospatial analysis on the composition of microbial communities associated with physicochemical properties and antibiotic pollution of samples. The co-occurrence networks of water and sediment were also built and analyzed. Our results showed that the microbial communities of impacted and less-impacted samples of water were largely driven by the concentrations of TN, TP, NO-N, and NO-N, while those of sediment were affected by the concentrations of Sed-OM and Sed-TN. Antibiotics have also played important roles in shaping these microbial communities: the concentrations of oxytetracycline and tetracycline clearly reflected the variance in taxonomic diversity and predicted functional diversity between impacted and less-impacted sites in water and sediment samples, respectively. Furthermore, for samples from both water and sediment, large differences of network topology structures between impacted and less-impacted were also observed. Our results provide compelling evidence that the microbial community can be used as a sentinel of eutrophication and antibiotics pollution risk associated with agricultural activity; and that proper monitoring of this environment is vital to maintain a sustainable environment in Honghu Lake.

Major and trace element evaluation of the campano-maastrichtian sediments of anambra basin exposed around Enugu, Nigeria

ABSTRACT: An integrated geochemical and sedimentological study of the Campano- Maastrichtian sediment of Ajali and Owelli Formation exposed within the southern portion of the Anambra basin was undertaken to determine the sandstone provenance, tectonic setting, and paleo-weathering conditions. All sandstone samples are enriched in quartz (Q) but poor in feldspar (F) andlithic-fragments (L). The major-element concentrations of these sandstones reveal the relative homogeneity of their source. Geochemically, the sandstones are classified as quartzarenite, sub-litharenite, and subarkose. Tectonic setting discrimination diagrams suggest a passive continental margin. The sediments are enriched in SiO2 and depleted in Na2O, CaO and TiO2.Chemical index of weathering (CIW) of the sample suggests intense recycling and high degree of weathering in a humid climatic condition. Results of the elemental ratios critical of provenance compared to those of felsic and basic derived sediment of UCC and PAAS values suggests a felsic source rock. Cu/Zn, U/Th, Ni/Co and (Cu+Mo)/Zn paleo-oxygenation ratios used as redox parameters depicts an oxic environment. Finally, presence of minerals, like Anatase, Rutile and Microcline depicts an igneous and metamorphic source terrain

Diversity of culturable moderately halophilic bacteria producing extracellular hydrolytic enzymes from marine sediments / Diversidade de bactérias cultiváveis moderadamente halofílicas que produzem enzimas hidrolíticas extracelulares de sedimentos marinhos

A total of 114 moderately halophilic bacteria were isolated from marine sediment environments. The isolates are belonged to 23 species based on the 16S rRNA sequence analysis. 63, 52, 47, 57, 74, 15 and 4 isolates are able to produce protease, amylase, lipase, pectinase, pulluanase, xylanase, cellulase, respectively. Combined hydrolytic enzyme activity analysis show that 15 strains present 1 hydrolytic activity, 32 strains present 2 hydrolytic activities, 21 strains present 3 hydrolytic activities, 26 strains present 4 hydrolytic activities, 11 strains present 5 hydrolytic activities and 2 strains present 6 hydrolytic activities. Hydrolase activities are widely distributed in a variety of species. The highest rates for production of protease, amylase, lipase, pectinase, pullanase, xylanase and cellulase were observed in species of B. baekryungensis, Hallobacillus sp., B. pumilus, B. megaterium or P. chungwhensis, B. amyloliquefaciens, B. pumilus, B. baekryungensis, respectively. However, the higher activities of protease, pectinase and pulluanase are frequently produced by the species of Halomonas sp. B. amyloliquefaciens or P. chungwhensis, and Vibrio sp. respectively. This investigation show that the diversity of halophilic bacteria from marine sediments could serve as a potential source of hydrolytic enzymes for industrial applications. (AU)

Um total de 114 bactérias moderadamente halofílicas foram isoladas de ambientes de sedimentos marinhos. Os isolados pertencem a 23 espécies com base na análise da sequência 16S rRNA. 63, 52, 47, 57, 74, 15 e 4 isolados são capazes de produzir protease, amilase, lipase, pectinase, pululanase, xilanase, celulase, respectivamente. A análise da atividade enzimática hidrolítica combinada mostra que 15 cepas apresentam 1 atividade hidrolítica, 32 cepas apresentam 2 atividades hidrolíticas, 21 cepas apresentam 3 atividades hidrolíticas, 26 cepas apresentam 4 atividades hidrolíticas, 11 cepas apresentam 5 atividades hidrolíticas e 2 cepas apresentam 6 atividades hidrolíticas. Atividades de hidrolase são amplamente distribuídas em uma variedade de espécies. As maiores taxas de produção de protease, amilase, lipase, pectinase, pululanase, xilanase e celulase foram observadas em espécies de B. baekryungensis, Hallobacillus sp., B. pumilus, B. megaterium ou P. chungwhensis, B. amyloliquefaciens, B. pumilus, B. baekryungensis, respectivamente. No entanto, as atividades mais elevadas de protease, pectinase e pululanase são freqüentemente produzidas pelas espécies de Halomonas sp. B. amyloliquefaciens ou P. chungwhensis e Vibrio sp. respectivamente. Esta investigação mostra que a diversidade de bactérias halofílicas de sedimentos marinhos pode servir como uma fonte potencial de enzimas hidrolíticas para aplicações industriais. (AU)

Composition of bacterial community in enrichment cultures of shale by-products from Irati Formation, Brazil

ABSTRACT We examined microbial communities from enriched fine and retorted shale particles using sequencing of V4 variable region of 16S rRNA. High number of microbial genera was found in both enriched shale by-products that were dominate by Actinobacteria, Firmicutes and Proteobacteria, showing differences due to microbial colonization after the pyrolysis process.

Influence of sediment granulometry and salinity on the composition of an estuarine fish assemblage in the Mexican Tropical Pacific / Influencia de la granulometría del sedimento y la salinidad en la composición de una comunidad de peces estuarinos en el Pacífico tropical mexicano

Abstract Barra de Navidad lagoon (BNL) is one of the main coastal wetlands in the coast of the State of Jalisco, Mexico. It is a Ramsar site (wetland of international importance) and has been included among the 81 mangrove sites with biological relevance and ecological rehabilitation needs in Mexico. Although fish fauna composition is well known in BNL, little evidence exists that support seasonal and spatial changes of fish assemblages' structure. The hypothesis tested in this study was that there are significant seasonal and spatial changes in BNL fish assemblages' composition which can be explained, at least partially, by changes in salinity, water temperature and sediment's granulometry. Fish assemblages were sampled monthly from October 2012 to September 2013 at four zones of BNL, using gill nets (7.62 mm stretched mesh). A sample was taken every month in a randomly selected area of each zone. Prior to each sampling operation, water salinity and temperature were measured using an YSI-30 probe. Samples of sediment were collected with a Van Veen grab sampler in three randomly selected points of each zone for granulometry and organic matter analyses. A total of 2 026 individuals belonging to 48 species were collected. Slightly more than 90 % of all caught fish belonged to nine species: Peruvian mojarra (Diapterus brevirostris), Pacific crevalle-jack (Caranx caninus), White mullet (Mugil curema), Blue sea-catfish (Ariopsis guatemalensis), Oval flounder (Syacium ovale), Pacific lined sole (Achirus mazatlanus), Yellowfin mojarra (Gerres simillimus), Pacific bumper (Chloroscombrus orqueta) and Freckled porcupinefish (Diodon holocanthus). Generalized linear models yielded significant differences among zones for the mean abundance of each of these nine species, but only in two cases seasonal differences were significant (D. brevisrostris and C. caninus). Permutational multivariate analysis of variance yielded also significant differences among zones and between seasons for the composition of the fish assemblage. Redundancy analysis using salinity, temperature, and percentage mud in sediment as environmental variables showed that fish assemblage's composition varies along two main gradients defined by mud fraction of sediments in a small spatial scale (~ 3 km) and salinity in a seasonal scale. Percentage of variation explained by canonical axes was less than 25 %, indicating that other factors could be influencing changes in assemblage composition. As most species appear as juveniles in the lagoon, fluctuations in their abundances could be linked, at least partially, with recruitment events. Rev. Biol. Trop. 66(3): 1065-1077. Epub 2018 September 01.

Resumen La laguna Barra de Navidad (LBN) es uno de los principales humedales costeros en la costa del Estado de Jalisco, México. Es un sitio Ramsar (humedal de importancia internacional) y ha sido incluida entre los 81 sitios de manglar con relevancia biológica y necesidades de rehabilitación en México. Aunque la composición de la ictiofauna es bien conocida en LBN, hay poca evidencia sobre la existencia de cambios estacionales y espaciales en la estructura de la misma. La hipótesis que guió este trabajo fue que en la composición de la ictiofauna de la laguna Barra de Navidad hay cambios espaciales y estacionales que pueden ser explicados, al menos parcialmente, por cambios en la salinidad, temperatura del agua y granulometría del sedimento. Los peces fueron muestreados mensualmente de octubre 2012 a septiembre 2013 en cuatro zonas de la laguna, usando redes agalleras (7.62 mm de malla estirada). Se tomó una muestra cada mes en un área seleccionada aleatoriamente en cada zona. Previo a cada operación de muestreo, se midieron la salinidad y la temperatura del agua con una sonda YSI-30. Muestras de sedimento para análisis granulométrico y del contenido de materia orgánica, se recolectaron con una draga tipo Van Veen en tres puntos seleccionados aleatoriamente en cada zona. Se recolectaron 2 026 individuos de 48 especies de peces. Poco más de 90 % de todos los peces contados pertenecieron a nueve especies: Diapterus brevirostris, Caranx caninus, Mugil curema, Ariopsis guatemalensis, Syacium ovale, Achirus mazatlanus, Gerres simillimus, Chloroscombrus orqueta y Diodon holocanthus. Modelos lineales generalizados arrojaron diferencias significativas entre zonas para la abundancia media de estas nueve especies, pero solo en dos casos se encontraron diferencias significativas entre estaciones (D. brevirostris y C. caninus). El análisis multidimensional de varianza basado en permutaciones, arrojó también diferencias significativas entre zonas y entre estaciones para la composición de la ictiofauna. El análisis de redundancia usando la salinidad, la temperatura y el porcentaje de lodo en el sedimento como variables ambientales, mostró que la composición de la ictiofauna varía a lo largo de dos gradientes definidos por la fracción de lodo de los sedimentos en una escala espacial pequeña (~ 3 km) y la salinidad en una escala estacional. El porcentaje de variación explicado por los ejes canónicos fue menor de 25 %, indicando que otros factores pudieran influir en los cambios de la composición de la ictiofauna. Como la mayoría de las especies aparecen en su estadio juvenil en la laguna, las fluctuaciones en sus abundancias pudieran estar relacionadas, al menos parcialmente, con eventos de reclutamiento.

Relación especie-área y distribución de la abundancia de especies en una comunidad vegetal de un inselberg tropical: efecto del tamaño de los parches / Species-area relation and species abundance distribution in a plant community on a tropical inselberg: effect of patch size

Resumen Aunque los inselbergs son afloramientos rocosos icónicos con un alto valor biogeográfico, poco se conoce sobre los mecanismos responsables de la estructuración de comunidades vegetales. El objetivo de esta investigación fue evaluar cómo el tamaño de los parches de vegetación influye en la relación especie-área y distribución de la abundancia de especies de una comunidad en un inselberg del Monumento Natural "Piedra La Tortuga", región Guayana, Venezuela. Por este motivo, se establecieron tres preguntas de investigación: ¿Cuál es el efecto del tamaño de los parches sobre la riqueza de especies? ¿Qué tipo de modelo especie-área (SAR) presenta mejor ajuste en esos parches de vegetación? ¿Cómo es la distribución de las abundancias de las especies (SADs) es inducida por el tamaño de los parches? Se realizó un muestreo aleatorio estratificado en parches que oscilaron entre 0.34 y 14.8 m2, totalizando 40 unidades muestrales (226 m2). Todos los individuos encontrados en los 40 parches fueron identificados a nivel de especie. La composición florística en las diferentes muestras estuvo representada por 19 familias, 22 géneros y 24 especies, de las cuales 50 % son endémicas de inselbergs y dos están amenazadas de extinción. Se identificaron dos grupos de tamaños de parches (grandes 8-15 m2 y pequeños ≤ 7.9 m2) en relación a la abundancia y composición de especies, con diferencias significativas entre los grupos. Las curvas de acumulación de especies para cada grupo de tamaño de parche muestran una tendencia contrastante con marcadas diferencias en la riqueza observada entre los grupos de tamaños de parches. Las curvas de los modelos SADs tuvieron un ajuste significativo de la serie geométrica en las dos categorías de parches. El modelo SAR de la función potencia presentó los mejores ajustes especie-área, donde el aumento del área de los parches explicó un 82 % de la variación en el aumento del número de especies. Los resultados de este estudio demuestran por primera vez como el tamaño de los parches de vegetación de un inselberg tropical tiene una fuerte influencia sobre la riqueza, distribución de la abundancia y composición de especies. Así mismo, se determinó que el modelo geométrico SAD presentó el mejor ajuste en la comunidad en función del tamaño de los parches como un indicador de recursos, donde la abundancia de una especie puede ser equivalente a una proporción del espacio ocupado. También se presume que los cambios de tamaño de los parches, podría estar asociado con la disponibilidad de nutrientes y agua, como ha sido demostrado en otros ambientes de tierras secas. En algunos estudios se ha argumentado que la variación en la composición de especies entre los perfiles de vegetación de inselbergs tropicales está condicionada principalmente por la estructura del hábitat y el déficit hídrico. Sin embargo, no se había discutido cómo el tamaño de los parches de vegetación tiene un efecto en la riqueza. Los análisis SADs y SAR pueden proporcionar explicaciones complementarias sobre la estructuración de comunidades vegetales en inselbergs.

Abstract Although inselbergs are iconic rock outcrops with a high biogeographic value, little is known about drivers responsible for the plant community assembly. The aim of this research was to evaluate how the patch size distribution of vegetation influences the species-area relationship and species abundance distribution of a community in an inselberg of the "Piedra La Tortuga" Natural Monument of the Guayana region, Venezuela. In this context, three research questions were established: What is the effect of patch size on species richness? What species-area model (SAR) has the best fit in those vegetation patches? How is the distribution of species abundances (SADs) induced by the patch size distribution? A stratified random sampling was performed in patches ranging from 0.34 to 14.8 m2, totaling 40 sampling units (226 m2). All individuals found in the 40 patches were identified at species level. The floristic composition in the different samples was represented by 19 families, 22 genera and 24 species, of which 50 % are endemic to inselbergs and two, are threatened of extinction. Two groups of patch sizes were identified (large 8-15 m2 and small ≤ 7.9 m2) in relation to the abundance and composition of species. The species accumulation curves for each patch size group show a contrasting tendency with marked differences in the observed richness among patch size groups. The curves of the SADs models had a significant adjustment of the geometric series in the two categories of patches. The SAR model of the power function presented the best species-area adjustments, where the increase in patch area accounted for 82 % of the variation in the increase in the number of species. The results of this study demonstrate for the first time how vegetation patches of a tropical inselberg have a strong influence on richness, abundance distribution and species composition. Likewise, it was determined that the SAD geometric model presented the best fit in the community as a function of patch size as a resource indicator, where the abundance of a species can be equivalent to a proportion of the space occupied. It is also presumed that changes in patch sizes could be associated with nutrient and water availability, as has been demonstrated in other dryland environments. In some studies it has been argued that variation in species composition among vegetation profiles of tropical inselbergs is mainly conditioned by habitat structure and water deficit. However, it had not been discussed how the size of patches of vegetation has an effect on richness. SADs and SAR analyzes can provide complementary explanations on community assembly in inselbergs. Rev. Biol. Trop. 66(2): 937-951. Epub 2018 June 01.

Genome sequence of Streptomyces mangrovisoli MUSC 149T isolated from intertidal sediments

ABSTRACT As the largest genus in Actinobacteria family, Streptomyces species have the ability to synthesize numerous compounds of diverse structures with bioactivities. Streptomyces mangrovisoli MUSC 149T was previously isolated as a novel streptomycete from mangrove forest in east coast of Peninsular Malaysia. The high quality draft genome of MUSC 149T comprises 9,165,825 bp with G + C content of 72.5%. Through bioinformatics analysis, 21 gene clusters identified in the genome were associated with the production of bioactive secondary metabolites. The presence of these biosynthetic gene clusters in MUSC 149T suggests the potential exploitation of the strain for production of medically important compounds.

Neurological responses of embryo-larval zebrafish to short-term sediment exposure to decabromodiphenylethane / 浙江大学学报（英文版）（B辑：生物医学和生物技术）

Decabromodiphenylethane (DBDPE) has been widely used as an alternative flame retardant due to the restriction or phase-out of traditional polybrominated diphenyl ethers (PBDEs), and is of increasing concern regarding its ubiquity, persistence, and potential adverse effects. In the present study, the toxicological effects of DBDPE were evaluated using zebrafish as an in vivo model. Upon being exposed to DBDPE-polluted sediments for a short term, it was found that the mortality and malformation of zebrafish (including edema, bent notochord, and bent tail) were not affected even at the highest concentration tested (1000.0 µg/kg dry sediment). Regarding behavioral responses, it was found that zebrafish larvae of 48 hours post fertilization (hpf) in all groups escaped successfully with a touch to the dorsal fin. However, when exposed to the highest DBDPE concentration, the larvae of 120 hpf exhibited significantly smaller distances as compared to the control. Moreover, the results of the acetylcholinesterase (AChE) activity, the expression levels of two important nerve-related genes, and the cell apoptosis all indicated that DBDPE posed low neurotoxicity in embryo-larval zebrafish. The results in this study shed some light on the potential risks of DBDPE in the real environment and highlight the application of the sediment exposure route in the future.

Phenol degradation and genotypic analysis of dioxygenase genes in bacteria isolated from sediments

Abstract The aerobic degradation of aromatic compounds by bacteria is performed by dioxygenases. To show some characteristic patterns of the dioxygenase genotype and its degradation specificities, twenty-nine gram-negative bacterial cultures were obtained from sediment contaminated with phenolic compounds in Wuhan, China. The isolates were phylogenetically diverse and belonged to 10 genera. All 29 gram-negative bacteria were able to utilize phenol, m-dihydroxybenzene and 2-hydroxybenzoic acid as the sole carbon sources, and members of the three primary genera Pseudomonas, Acinetobacter and Alcaligenes were able to grow in the presence of multiple monoaromatic compounds. PCR and DNA sequence analysis were used to detect dioxygenase genes coding for catechol 1,2-dioxygenase, catechol 2,3-dioxygenase and protocatechuate 3,4-dioxygenase. The results showed that there are 4 genotypes; most strains are either PNP (catechol 1,2-dioxygenase gene is positive, catechol 2,3-dioxygenase gene is negative, protocatechuate 3,4-dioxygenase gene is positive) or PNN (catechol 1,2-dioxygenase gene is positive, catechol 2,3-dioxygenase gene is negative, protocatechuate 3,4-dioxygenase gene is negative). The strains with two dioxygenase genes can usually grow on many more aromatic compounds than strains with one dioxygenase gene. Degradation experiments using a mixed culture representing four bacterial genotypes resulted in the rapid degradation of phenol. Determinations of substrate utilization and phenol degradation revealed their affiliations through dioxygenase genotype data.

Early Devonian (Late Emsian) shark fin remains (Chondrichthyes) from the Paraná Basin, southern Brazil

ABSTRACT We report on the pioneering discovery of Devonian fish remains in the Paraná Basin, which represents the southernmost record of fishes from that period in mainland South America. The material comes from an outcrop at the lower portion of the São Domingos Formation, within Sequence C of the Paraná-Apucarana sub-basin in Tibagi, State of Paraná. Marine invertebrates are abundant in the same strata. The dark colored fish remains were collected in situ and represent natural moulds of partially articulated shark fin rays (radials). No elements such as teeth or prismatic cartilage have been preserved with the fins rays. This can be attributed to the dissolution of calcium-phosphatic minerals at the early stages of fossilization due to diagenetic processes possibly linked to strong negative taphonomic bias. This may have contributed to the fact that fishes remained elusive in the Devonian strata of this basin, despite substantial geological work done in the Paraná State in recent decades. In addition, the scarcity of fish fossils may be explained by the fact that the Devonian rock deposits in this basin originated in a vertebrate impoverished, cold marine environment of the Malvinokaffric Realm, as previously suspected.

The effect of heavy metal contamination on the bacterial community structure at Jiaozhou Bay, China

Abstract In this study, determination of heavy metal parameters and microbiological characterization of marine sediments obtained from two heavily polluted sites and one low-grade contaminated reference station at Jiaozhou Bay in China were carried out. The microbial communities found in the sampled marine sediments were studied using PCR-DGGE (denaturing gradient gel electrophoresis) fingerprinting profiles in combination with multivariate analysis. Clustering analysis of DGGE and matrix of heavy metals displayed similar occurrence patterns. On this basis, 17 samples were classified into two clusters depending on the presence or absence of the high level contamination. Moreover, the cluster of highly contaminated samples was further classified into two sub-groups based on the stations of their origin. These results showed that the composition of the bacterial community is strongly influenced by heavy metal variables present in the sediments found in the Jiaozhou Bay. This study also suggested that metagenomic techniques such as PCR-DGGE fingerprinting in combination with multivariate analysis is an efficient method to examine the effect of metal contamination on the bacterial community structure.

Anaerobic microbiota: spatial-temporal changes in the sediment of a tropical coastal lagoon with ephemeral inlet in the Gulf of Mexico / Microbiota anaerobia: cambios espacio-temporales en el sedimento de una laguna costera tropical con boca efímera en el Golfo de México

Abstract:Sulfate-reducing bacteria (SRB) and methanogenic archaea (MA) share common niches in coastal sediments during the terminal phases of the anaerobic mineralization of organic matter. The purpose of this study was to analyze the spatial - temporal variation of SRB and MA in the sediments of a tropical coastal lagoon with ephemeral inlet (La Mancha, Veracruz, Gulf of Mexico) and its relationship with environmental changes. A total of 24 sediment samples were collected during the dry (April, May), rainy (July, September) and Northern (November, February) seasons in the period 2013-2014. Microbiological analyses included the quantification of the viable SRB and MA with different substrates, as well as mineralization experiments to determine the effect of sulfate on acetate oxidation. The analyzed environmental variables in the sediments included: temperature, pH, Eh, salinity, sulfates, H2S, volatile solids, carbohydrates, and granulometric characteristics. Major changes occurred between the dry and rainy seasons. During the dry season, sulfate-reducing abundance was significantly greater with lactate (8.3x105 - 1.2x107 cells / g) and propionate (1.8x105 - 6.6x106 cells / g) as substrates, while the MA that use methanol were dominant (4.2x105 - 9.1x106 cells / g). In contrast, during the rainy season, hydrogenophylic (2.6x105 - 8.3x106 cells/g) and acetoclastic (5.4x105-6.4x106 cells / g) MA increased significantly and SRB decreased in the analyzed substrates. An apparent competition for acetate was observed, with a greater oxidation in the media with sulfates in the dry season (0.06 mM acetate / g sediment / day), and a greater oxidation in the media without sulfates in the rainy season (0.02 mM acetate / g sediment / day). SRB and MA were present throughout the sediment column, however SRB dominated in the first centimeters of the sediment while MA were abundant in deeper layers. In conclusion, SRB and MA together played a role in the mineralization of organic matter in the sediments of La Mancha lagoon, with sulfate-reduction dominating in the dry season (closed inlet) and methanogenesis during the rainy season (open inlet). Changes in rainfall and river input in this lagoon significantly affect salinity and sulfate content, the main factors that regulate the dynamics of SRB and MA in the sediments. Rev. Biol. Trop. 64 (4): 1759-1770. Epub 2016 December 01.

Resumen:Las bacterias sulfatorreductoras (BSR) y las arqueas metanogénicas (AM) comparten nichos comunes en los sedimentos costeros durante las fases terminales de la mineralización anaerobia de la materia orgánica. El objetivo del presente estudio fue analizar la variación espacio-temporal de las BSR y AM en los sedimentos de una laguna costera tropical con una boca efímera (La Mancha, Veracruz, Golfo de México) y su relación con los cambios ambientales. Un total de 24 muestras de sedimentos fueron recolectadas en las temporadas de secas (abril, mayo), lluvias (julio, septiembre) y nortes (noviembre, febrero) en el periodo 2013 - 2014. Los análisis microbiológicos incluyeron la cuantificación de las BSR y AM viables con diferentes sustratos, así como experimentos de mineralización para determinar el efecto de los sulfatos en la oxidación del acetato. Las variables ambientales analizadas en los sedimentos incluyeron la temperatura, pH, Eh, salinidad, sulfatos, H2S, sólidos volátiles, carbohidratos y las características granulométricas. Los principales cambios se presentaron entre las estaciones de secas y lluvias. En la temporada de secas la abundancia sulfatorreductora fue significativamente superior con lactato (8.3x105 - 1.2x107 células / g) y propionato (1.8x105 - 6.6x106 células / g) como sustratos, mientras que las AM que emplean metanol dominaron (4.2x105 - 9.1x106 células / g). Por el contrario, en la época de lluvias aumentaron significativamente las AM hidrogenofílicas (2.6x105-8.3x106 células / g) y acetoclásticas (5.4x105-6.4x106 células / g), disminuyendo las BSR con los sustratos analizados. Se determinó una competencia aparente por el acetato. Su oxidación fue mayor en los medios con presencia de sulfatos en las temporadas de secas (0.06 mM acetato / g sedimento / día), mientras que aumentó en los medios sin sulfatos en la época de lluvias (0.02 mM acetato / g sedimento / día). Las BSR y las AM estuvieron presentes a lo largo de la columna sedimentaria; sin embargo, las BSR dominaron en los primeros centímetros del sedimento y las AM abundaron a mayor profundidad. En conclusión las BSR y AM participaron de manera conjunta en la mineralización de la materia orgánica en los sedimentos de la laguna de La Mancha, dominando la sulfatorreducción en la temporada de secas (boca cerrada) y la metanogénesis en la época de lluvias (boca abierta). Los cambios en el aporte fluvial y la precipitación en esta laguna afectaron significativamente la salinidad y el contenido de sulfatos, siendo los principales factores que regularon la dinámica de las BSR y AM en los sedimentos.